Mathias Vandenbogaert

Originaire de Gand, la flamboyante (Belgique, voir citoyenneté) et biochimiste de formation.
Curriculum Vitae

Research interests:

Genomics, proteomics, bioinformatics ...

PhD Thesis

Titre français: Algorithmes et mesures statistiques pour la recherche de signaux fonctionnels dans les zones de régulation.
English Title: Algorithms and statistical metrics for assessing the significance of functional motifs in biological regulatory sequences.
(Promotors: M. Régnier & S. Dulucq)

Publications:

Denise (A.), Régnier (M.), and Vandenbogaert (M.). - Assessing statistical significance of overrepresented oligonucleotides. In WABI'01. pages 85--97. - Springer-Verlag, 2001. Proc. First Intern. Workshop on Algorithms in Bioinformatics, Aarhus, Denmark, August 2001.

Vandenbogaert (M.) and Makeev (V.). - Analysis of bacterial RM-systems through genome-scale analysis and related taxonomic issues. In Silico Biology, vol. 12, n°3, 2003, pages 127--143. - Special Issues of Volume 3: Bioinformatics on Genome Regulation and Structure (BGRS 2002, Novossibirsk), Published as online journal by Bioinformation Systems e.V., (online version), (BibTeX reference).

Tompa M., Li N., Bailey T.L., Church G.M., De Moor B., Eskin E., Favorov A.V., Frith M.C., Fu Y., Kent J.W., Makeev V.J., Mironov A.A., Noble W.S., Pavesi G., Pesole G., Régnier M., Simonis N., Sinha S., Thijs G., van Helden J., Vandenbogaert M., Weng Z., Workman C., Ye C. & Zhu Z. - An Assessment of Computational Tools for the Discovery of Transcription Factor Binding Sites. Nature Biotechnology, vol. 23, no. 1, January 2005, 137 - 144.

C. Banderier and M. Vandenbogaert, A Markovian generalization of Feller's coin tossing constants, unpublished note (2000).

Boeva (V.), Clément (J.), Régnier (M.), and Vandenbogaert (M.). - Assessing the significance of Sets of Words. In Combinatorial Pattern Matching 05. Lecture Notes in Computer Science, vol. 3537, pages 358--370. - Springer Verlag, 2005. In Proceedings CPM'05, Jeju Island, Korea.

Régnier (M.) and Vandenbogaert (M.). - Comparison of statistical significance criteria. Journal of Bioinformatics and Computational Biology, To appear. - 12 pages. In press.

Presentations/Posters:

BBC'02: 3rd Belgian Bioinformatics Conference,
April, 12^th 2002,
Oral contribution.

JOBIM'02
poster proposal
(accepted for presentation <ps>)

Recomb 2003 poster abstract submission
pdf, ps, tex, online version

Moscovian Conference in Computational Molecular Biology (MCCMB 2003) poster-list
This poster

RECOMB Satellite Workshop on Systems Biology and Regulatory Genomics 2-4 dec. 2005
UCSD La Jolla CA

Resumés de séminaire

Genome Analysis and sequences with Random Letter Distribution, by Michel Termier. Abstract. Summary [ps | pdf | html].
Enumerative Combinatorics: Combinatorial Decompositions and Functional Equations, by Mireille Bousquet-Mélou. Summary [ps | pdf | html].

Masters Thesis

Publ. Univ. Ghent, laboratory of Biochemistry, Microbiology and Physiology:
Klonering en expressie van het Chlorobium limicola forma thiosulfatophylum cytochroom c-551 gen, deel uitmakend van een thiosulfaatverbruikend gencluster (Promotors: Prof. Dr. J. Van Beeumen, Dr. ir. F. Verté). UGent thesissen, 1999. [pdf]